13  Reference versions

13.1 Downloading genome reference files

Species	Version	Command
human	GRCh38/hg38	wget https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/hg38.fa.gz
human	GRCh37/hg19	wget https://hgdownload.soe.ucsc.edu/goldenPath/hg19/bigZips/hg19.fa.gz
mouse	GRCm39/mm39	wget https://hgdownload.soe.ucsc.edu/goldenPath/mm39/bigZips/mm39.fa.gz
mouse	GRCm38/mm10	wget https://hgdownload.soe.ucsc.edu/goldenPath/mm10/bigZips/mm10.fa.gz

13.2 Additional Resources

1. Broad Institute